Workflows

For an end-to-end example, see the tsinfer workflow.

• tsinfer workflows
  • Installing dependencies
  • An Example
• Externally-created ARGs
  • ARG filenames and sampling
  • Attaching and checking populations
• Examining results
  • Viewing parameter values
  • Parameter confidence intervals
  • Model comparison
  • Reading/processing results
• Using real data
• Very short examples
  • ARG has too many populations
  • ARG has too few populations
• Relate workflows
  • Installing dependencies
  • An Example
• SINGER workflows
  • Steps 1-2: Same as Relate
  • Step 3: Infer ARGs with SINGER
  • Step 4-5: Same as Relate